ASCIIGenome
stable
  • Description
  • Installation
  • Input and output
  • Usage
  • Examples
  • FAQ and miscellanea
  • Command reference
ASCIIGenome
  • Docs »
  • ASCIIGenome: Text only genome viewer!
  • Edit on GitHub

ASCIIGenome: Text only genome viewer!¶

ASCIIGenome is a genome browser based on command line interface and designed for console terminals.

Contents:

  • Description
    • Getting help
    • How to cite
    • Credits
  • Installation
    • Quick start
    • With conda
    • With Homebrew
    • A little more detail
    • Compiling the source code
  • Input and output
    • Input file formats
      • Handling large files
    • Setting a genome
      • Reference sequence
    • Output
      • Formatting of reads and features
      • Title lines
    • Saving screenshots
  • Usage
    • Quick start
    • Interactive commands
  • Examples
    • Video clips
    • Why the command line
    • Open and browse
    • Finding & filtering stuff
      • Advanced filtering with awk
    • Batch and non-interactive mode
    • Finding sequence motifs
  • FAQ and miscellanea
    • Can I change colour theme / Can I use my configuration?
    • Can I turn off case sensitivity?
    • Why reads and coverage in bam tracks sometimes disappear?
    • Can I execute multiple commands inside -x/--exec or at the command prompt?
    • How can I print the header of a VCF file?
  • Command reference
    • Navigation
      • goto
      • INT
      • PERCENT
      • plus +
      • minus -
      • f - forward
      • b - backward
      • ff
      • bb
      • ]
      • [
      • zi
      • zo
      • extend
      • l - left
      • r - right
      • p
      • n
      • next
    • Find
      • find
      • seqRegex
      • bookmark
    • Display
      • grep
      • awk
      • featureColor
      • hideTitle
      • genotype
      • editNames
      • dataCol
      • print
    • Alignments
      • readsAsPairs
      • filterVariantReads
      • rpm
      • samtools
      • BSseq
    • General
      • setGenome
      • setConfig
      • explainSamFlag
      • show
      • recentlyOpened
      • open
      • reload
      • dropTracks
      • orderTracks
      • posHistory
      • history
      • save
      • sys
      • q
      • h

Indices and tables¶

  • Index
  • Module Index
  • Search Page
Next

© Copyright 2016, Dario Beraldi Revision e00283b3.

Built with Sphinx using a theme provided by Read the Docs.
Read the Docs v: stable
Versions
latest
stable
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds

Free document hosting provided by Read the Docs.